Scaffold Ga0208029_1002136

Overview

Basic Information

• Taxon OID: 3300025264
• Scaffold ID: Ga0208029_1002136
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7886
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 6.37
  • Depth (m): 2851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002150	Metagenome	589	Y
F003270	Metagenome	496	Y
F025299	Metagenome / Metatranscriptome	202	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208029_100213610	F003270	N/A	MAKKRRRRKSKNNKHRSIKSMVRQVVNKGAAPLAFWQQLSEKDYQVLNADGNYRALDYLGKLKVASNILTGSLTGRVLFSDQYNPQPSGQPRINPAGIINKWTGIGIAGKIYGALGRSMKLPEAASIDRIGSKLIFGGAIGGFFDPPSAQGRISTYAVTPNVMVQNRAQTDRSYGVARSNRSFVPLDSFDYSTGSAFRR
Ga0208029_100213613	F025299	AGG	MIVEEIPFFVEFVIIGIVLGFGYGFTKLFLNHAKDKNRIRRSERKAKEANSVEDEMDKYLNNIPAITQHLEIELMNLKEKGATPEQCKSLESKLDLARKAQQYEPILRIVGKPAIKKVLSIVDKFGV
Ga0208029_100213614	F002150	GGAG	MVSVAVPGMIASKTAKKSGQVLQEQFGYNFIDLVTKLALFYMISFLIAKYMEAVIYFQGGLSTIAGFFGIKLVQADQLPNQWVSLFVDTDQQTYSSTPTAPGQFNPPGWDRPYDYGTEQHQQAEPHLFPQKDKQFRFWDLINAIAIFYISWEAYKYWQRGGKDFLTLGIFGLLIAVLSVLSFSRFLNRFSLNRFQEANK