Scaffold Ga0208029_1002008

Overview

Basic Information

• Taxon OID: 3300025264
• Scaffold ID: Ga0208029_1002008
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8247
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 6.37
  • Depth (m): 2851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008778	Metagenome / Metatranscriptome	328	Y
F012399	Metagenome	281	Y
F068118	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208029_10020081	F068118	N/A	RTAAERSLSPPCVPHRKDAMAKAKCVQNVTFGATGEVYESGKVYDVPAATLKRYGEYFEKMAAKPQNKAKTTEENK
Ga0208029_10020084	F008778	GGAGG	LSRSGALAQIDTLLSAISDPAFVAVYRGEPLAIAGSPVLAFWLTGRTNDFQTLGDIGSRVTVQIRAYFRMQDTPDVRESIEEEVWDAMVQIDTQLRSDADLGGNVTDSSVGPASVGYTTMSGGVFRTVSVSYEMQLMGEVGITP
Ga0208029_10020087	F012399	GGA	MVVATNGIKPYVIQRRRAILEFEEIEYEGLHVEARLDVDLRTFLDLQSLAGAGDANPSDLRSAFSMFGDEILHSWNMTDEDGTVLPADASGFLSLPPALATKILGSWTEAATTAGEVSAS