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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025264 Open in IMG/M |
| Scaffold ID | Ga0208029_1001998 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8289 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (68.42%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mediterranean Sea | |||||||
| Coordinates | Lat. (o) | 39.48 | Long. (o) | 6.37 | Alt. (m) | Depth (m) | 2851 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000704 | Metagenome | 928 | Y |
| F000730 | Metagenome / Metatranscriptome | 917 | Y |
| F003616 | Metagenome | 477 | Y |
| F038477 | Metagenome | 166 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208029_100199813 | F038477 | N/A | MVKMPEYLKKAIAYFKDNEIPRDILISVGSAVAGAFVFDRILRRDEDQDEDS |
| Ga0208029_100199817 | F003616 | GAGG | LIWSEKLGHEIGTYNSLGGMKILPKPFIHSTLNTIVTCRICKGTGLNAITHDSGLVTLNKCVLCKGVKRRSNRVG |
| Ga0208029_10019983 | F000730 | N/A | MAFTSIQKIGCLILVNEFIPPEIIPLVWFSCISVTVYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLITNAPRILHEIDKQIAEQKAAGVDDAQMKGLYQKKQLLSLVADNQEVINIIGKPIIKKLLGFVKAI |
| Ga0208029_10019984 | F000704 | AGGTGG | MPHDTGEIQPSKVKSVSVYNVGDYGEDLFLPFTDVGLTETSITFSTATVTRDTDDSNQPMDDFPAIYSDTDTGVLLNEGNDTAFSQTYVFTPDMTAICYALHLVFPAAVICSAFTSGTLNIGALHIKLTERSTNDRLLYENTFQSGAANLTGTGTSLHFFQQDVVETILVRKGNPIDILVELITVKTGTNTRQEGYVTPAPYLKTAVMKRFTPAGIALHLHADLSHADGVYKYTKNRVSNLGQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |