Scaffold Ga0207895_1041673

Overview

Basic Information

• Taxon OID: 3300025260
• Scaffold ID: Ga0207895_1041673
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP112 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 771
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 15.9164
  • Long. (^o): -124.5211

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000226	Metagenome	1525	Y
F040337	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207895_10416731	F040337	GAGG	MSNLLKPNTTWLVVKKVEYNSSSFTNDYSVPKFTKNKGIADQYLHSLNMLNEKKDTSYFIVEEPSE
Ga0207895_10416733	F000226	GAGG	MKHRTIKALPEYLQPKILSAVAYINECSPNLNKAVERINTVRENLSDKEVMWVMSLLTFEKLLDMVQDSDEFKNLMPTKR