Scaffold Ga0207895_1011202

Overview

Basic Information

• Taxon OID: 3300025260
• Scaffold ID: Ga0207895_1011202
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP112 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1628
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 15.9164
  • Long. (^o): -124.5211

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033842	Metagenome / Metatranscriptome	176	N
F066859	Metagenome / Metatranscriptome	126	N
F078831	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207895_10112022	F033842	AGGAG	MQILKTLTDPTKLIDKAKLGMKGAAGYAAATVALEAGTQILERFVLDPYLPAAANVMNTVITNNAPGLGTIDVRDAIVLLPAETQAYQMLSKSNKQTHFINALASYVTKIVLRRTGLNPKEIADKAEKIITPRTMLPSVM
Ga0207895_10112023	F078831	GAG	MVQTNESIYGKHRAFTASQQNLVLPGAKSKYLEAISITINGLQDGSTATTIANALGLVNPLEIDVGGIPQIRLRLSDMYAIDMLWLQHNPLTKISAGTNEEWIVNQIVYPCWFPPSRAEATLSATFASVTNADNTEISITAEYLDGIPRNEALYYSEFSRNTDGVDSSSFGNWTQTTNLVGNMTGMLFNSTTIPGGSTLMEDGTIQQVRIQGNGNTLLVYEWAEIQNPGIFNGQMFNALEESPANTSILDNYRWLSLAKEPIPAGTRVQTDIMAGVSAEAVRTVQMQQVPFRGR
Ga0207895_10112024	F066859	AGG	MVHELPDNNGRVQTGINTSRAGYYISNFDVSESVTLTPQGGGTIDIVLPPGAKIAVPDKIGMIAQGGNSSRNY