Scaffold Ga0207876_1045912

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207876_1045912

Scaffold Ga0207876_1045912

Overview

Basic Information
Taxon OID	3300025259 Open in IMG/M
Scaffold ID	Ga0207876_1045912 Open in IMG/M
Source Dataset Name	Marine viral communities from the Deep Pacific Ocean - MSP-146 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	578
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	37.133	Long. (^o)	-17.5322	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055187	Metagenome / Metatranscriptome	139	N
F070553	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207876_10459122	F055187	N/A	MRIVNGRGIKSPADLVGLKPFKDAKLLRHEAIERMKRHMERKLKQSKEEARLAQPYVRSEDAPSWDSWLG
Ga0207876_10459123	F070553	GGA	MLDNFDAVAKLIEMNKQFRKIIKELVANGFDIKQTQKGFRIAPPKSCTNQRVYFTHGGEACLHPIRRDFVRQYGYR

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