Scaffold Ga0207876_1016939

Overview

Basic Information

• Taxon OID: 3300025259
• Scaffold ID: Ga0207876_1016939
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-146 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1127
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 37.133
  • Long. (^o): -17.5322

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010949	Metagenome / Metatranscriptome	297	Y
F100964	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207876_10169391	F010949	N/A	STLRIKDTDLGRTGISRALDISPLTNAVTGATAYLWVGNLTVTNSSFPTFKMETSDVANLVTGLLCDGHTMAATISNTVSDQVLSSERLSSVYEVDGSIVDKIQIHITGTSGAFIENLILDNVDTWAGEMYLSRMKIGTMTMNNSNKVGDGSGVDSSSCNWEPNVAARNITNTIQDRPIKVQ
Ga0207876_10169393	F100964	GGGGG	MKRALGLGLMTAVVAGVSGALMIGWAYEGPMRFIRRVKLRKALR