Scaffold Ga0207899_1027915

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207899_1027915

Scaffold Ga0207899_1027915

Overview

Basic Information
Taxon OID	3300025257 Open in IMG/M
Scaffold ID	Ga0207899_1027915 Open in IMG/M
Source Dataset Name	Marine viral communities from the Deep Pacific Ocean - MSP-134 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	995
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.3272	Long. (^o)	-52.639	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011673	Metagenome	288	Y
F023876	Metagenome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207899_10279152	F011673	GGA	MSNQPFKVLPIYLQPRILSAVSYIHQSPNKEIGLERINKVSRKLSDREMKYVLSLLVFDQLLDMVSESDDFKNFTSSMKERTVH
Ga0207899_10279153	F023876	N/A	EIERKATLDNECYEGVHKKFGYPYKIYVDVQATEERNNGKPQYRCASEKWEINEQPTL

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