Scaffold Ga0207899_1021901

Overview

Basic Information

• Taxon OID: 3300025257
• Scaffold ID: Ga0207899_1021901
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-134 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1178
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.3272
  • Long. (^o): -52.639

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000993	Metagenome / Metatranscriptome	811	Y
F022669	Metagenome	213	Y
F028626	Metagenome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207899_10219012	F028626	GAGG	MTTNKLNKKKKEDYKVDDRICIFYVTDRVHDLEKIKDHKKLQKAITEFKDELIHNIGIDVMIKRSVQXQINLIKISSLKRK
Ga0207899_10219014	F000993	AGG	MTKLHHTEYKKNYKNYILNTVETGLNDEPLKTDEEKINYILDRFNKEYGFMIDRVGKHKAMAEWLSGLALDIDYYYDDIVKLAIKMGSIDENPSEKLQARVKENYWDFMANIIIGFKKXHQQTL
Ga0207899_10219015	F022669	N/A	TPENKRFFNDINYKVLTGGKSKTRFLIQHTYQFSDMFDGVKKAVFVVKPIAVDGKILPTVETLKELNQVKQYMKGA