Scaffold Ga0209759_1014138

Overview

Basic Information

• Taxon OID: 3300025256
• Scaffold ID: Ga0209759_1014138
• Source Dataset Name: Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2126
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Epiphytes → Unclassified → Arabidopsis Root → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location

• Location Name: University of North Carolina, USA
• Coordinates
  • Lat. (^o): 35.9082
  • Long. (^o): -79.0499

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012876	Metagenome / Metatranscriptome	276	Y
F049748	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209759_10141381	F012876	AGGAG	MTKTTSQFAALALSAFMTAALVSGMNGLATTQYAAADSLAMAPYGQTHVATQYVTVVGHRTNA
Ga0209759_10141382	F049748	AGGA	MDIKQDPNSIPNFNSGGRVGEPQRAEPEQVQSSVELDPTAGGDGATSEAAQHESLLGEGSGVGKRRSGEDPSKTGAGAVDGLVGAP