Basic Information | |
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Taxon OID | 3300025251 Open in IMG/M |
Scaffold ID | Ga0208182_1035049 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1122 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea | |||||||
Coordinates | Lat. (o) | 43.29 | Long. (o) | 8.1 | Alt. (m) | Depth (m) | 2535 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000929 | Metagenome / Metatranscriptome | 830 | Y |
F034956 | Metagenome / Metatranscriptome | 173 | Y |
F035335 | Metagenome | 172 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208182_10350491 | F000929 | GGAG | MSNGTQLGKSLSVGHVVATVGLIIGGFTFIYDLRESVAIQNFQLDSVEKRLERVVARTDDQFGEIMDHLVRLEEKLDAMVLPNPVFQKAR |
Ga0208182_10350492 | F034956 | N/A | VEGHGFASLSMLVYLCRYLCVLGSSMVHIQMKCAHLKIVKESYGSHLRFTIQLSFDFFILAIVSIIHGLCPWILTGTVSDKVKELNAVLNERWLNPK |
Ga0208182_10350493 | F035335 | N/A | MNIDAKFFGILIFLVSQTAAGIWWAASLSSEVERLGGIQGTSIPSIEKAIEGLDVMGFRVDQLSKELERINDRNDAIENQHSRLFEALQGNQIQQNSKGYGGYD |
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