Scaffold Ga0208182_1025669

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1025669
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1400
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F010690	Metagenome / Metatranscriptome	300	Y
F054091	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10256691	F054091	AGAAG	MIVEEIPYFVEFIILGIVLGFGYGFTKLFLNHAKDKSKIRRSERKAKEANSVEDELDKYLNNIPAITQHLEIELMNLKEKGATPE
Ga0208182_10256692	F002100	GAG	LSQIPRDSFRPALIKPTFDVSDYGHDLIIPLNCLSGSTVTLVPSTSTFVQVLEDSRVPVDEVNQFITNSDEMAGVHAGNDSDFDTTWEWLPDMSFQAYKASFSVAVFMNVSAYTSGNFAISSVQLTMKVIGGGEGDQVIVDKIINPGMSNMTGVASQIAILNIDTKTSAKIPDKPVSIQVKVNTSSGTGTYQCGLVPIFCYLAPAVPKTWTTSSVVVHAHADLAHAFPIFRDEDNMNMLDRSGIGL
Ga0208182_10256693	F010690	N/A	HFYHKPDNESTFTTATTNSGNDFTINDGMWLEDMYVSVFAGTPTVSQSISGYGEFSSNDFGNSLPLKVPMQPGACGLAGTMTPGNLQLASYHNTHMPMKTSCKISTSFTNDVTQSATTRFIMGVGYTKQG