Scaffold Ga0208182_1013768

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1013768
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2164
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000563	Metagenome	1022	Y
F028527	Metagenome	191	N
F031257	Metagenome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10137682	F031257	N/A	MVKEIVVILLLFNGEALLKHHDLILGSSIHSHLGGTVMECLDYGDQLREELSTHKWVDEDIMKSGWYLNDGSGTWQGYICG
Ga0208182_10137684	F000563	GAG	MRYKFKVTEDGKPEVEKEAMSFKKLLKSLVIPNPKWTGFMSYENKKGRIVTHSILNGKRI
Ga0208182_10137686	F028527	AGG	MKLDTWLDKTYKIRAKTAVGPKVMWGDNKKHGIDEIYFNKWLGTPKYDNGLDILWKRGYSPIDALVEWVEYTPWKKKWGRKKKK