Scaffold Ga0208182_1011669

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1011669
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2425
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009425	Metagenome / Metatranscriptome	318	Y
F022755	Metagenome	213	N
F028313	Metagenome	192	Y
F037944	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10116692	F037944	GGCGG	VMRRMSNRLDNGIDRDGFTLGVSLDWSHVFLGIIGLLFLSLAFMVGLAYGVGVLCD
Ga0208182_10116695	F009425	GAGG	MDRGLLIHFKMDRPRDHWREVSCKEIGCVNHAMGWKTILPAGDTANIEMIRRSGMGFREEREDGLVVFVFSPGQECFTGQGGGHRIALERDPIMTQDSRILEPLNFMDNYNDHMYRRSVNHG
Ga0208182_10116697	F022755	N/A	VVATNGTTAQTKKGFRIPDQTAHITFSGTDYDGAEIWVKLNVSFAHYIALREAAEGDDQAKMAELFGGEVLMEWNLEDASGKPVPATGAGMLQIPLSLAMLIVQHWIEAVSAVPAPLAETSGDLSTLAAASTATGE
Ga0208182_10116698	F028313	N/A	MISKPWELEEAELIDGLCQRYSCLPSQLMAEDVTILRMVAIVMEGKPEG