Scaffold Ga0208182_1010832

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1010832
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2553
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001034	Metagenome / Metatranscriptome	798	Y
F075975	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10108323	F001034	AGGA	VTLLSTDTYEDAQYQNDAPIGPQEPIPAGVHSIELSWDRSRGYMRVIIGGKTWWFKEYLGKAVVVGTDNGRGRITLRAMARLDGEVLTMYRPPDAKPHGMVEGLERKRTHNRLCYRRSSQDWRLRDERLPWNDPDALKFVTTYVGDLSAEWNGLDKIAHIYHNGTAVIDDQHICHLYDPDLSYG
Ga0208182_10108324	F075975	AGGAG	MPDMGPYMAEKYTKMIEAITNDLGRTADKLAFAQNILRALKNPDMLIDGAPLTLERLQVMENGDIRTLPPPPEMTCIEEVTKEFGKNGKKDKEAVLASDPA