Scaffold Ga0208182_1009926

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1009926
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2726
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015347	Metagenome / Metatranscriptome	255	Y
F020384	Metagenome / Metatranscriptome	224	N
F024807	Metagenome	204	N
F042567	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10099262	F015347	AGGA	MLLESASTECEEMHYDLKEDAILPDMDTIYSSAQEMRRFADRLNHWADALMVECRKMEHHQYMIELDDLRSESYAN
Ga0208182_10099263	F020384	N/A	MHNKKFHSYQKSLQKLRNIVSETLRSSGQGRQIEFDNQMRRAIRHIQIIKRNAPPDANGDLAMVEAYRLYDRLQRLSQYPTFFVDNTRKNPGRVASDRGRDYTNARPASVRWDVAAMMAVPMGGPDRNWWRPPPRPLPVKHYTKEELENEYPAFTMRKEREDAT
Ga0208182_10099264	F024807	N/A	MRSVKPHLQHTGTKMTKRLMPFGLVYHDGDQQLTLKLNGDPFVLTRDEADALAFHLNSFVEDMDQQRKPQRSAEGTDIEAEAHGEMLMAQYDDDPNPYHGDYSED
Ga0208182_10099265	F042567	GGAG	MTKEVKESGRRLKTDQEKAKDQQALAEGYNRLISAVDNFFEHYGHCEGDYGDIGMRHYDRLKEAHDRLIMPKQRMGETHIVVDWSELTDEERKTSSTAYWYEDD