Scaffold Ga0208182

Basic Information
Taxon OID	3300025251 Open in IMG/M
Scaffold ID	Ga0208182_1007160 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025251 Open in IMG/M

Scaffold ID

Ga0208182_1007160 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3436
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3436

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → Circular genetic element sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	43.29	Long. (^o)	8.1	Alt. (m)	Depth (m)	2535
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea

Coordinates

Lat. (^o)

43.29

Long. (^o)

8.1

Alt. (m)

Depth (m)

2535

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005319	Metagenome	405	Y
F005551	Metagenome	397	Y
F005580	Metagenome	396	Y
F010737	Metagenome	300	N
F058540	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10071601	F058540	N/A	PDVSSPLKKRDSYLRVSEDEPLLVTVDQVEKVNISTDGGIKEGVRVTCREVLTKRDGDDFSFHPTEEPKIKESYSTSSFYLLKDFQTASHWPKEGIFYWVWKASDGLRWEEA
Ga0208182_10071603	F005319	GAG	MTDLTFALIWILSFFLYLGIYTWHIPLRTQKKIESWLKSSESDETLLMSLDVITKKIREQMLIDFEEFMLPQARESLKKFWAGAMGNAAQELKGSEEGSQLSLLHNMTQDLSGQPWYIQAAASKLLPMITEAAAKGSKTKTDAVLGMGLQK
Ga0208182_10071605	F005551	GAG	MTLGPSKSVSRAKDGNIYGWSGSYALTSSAVTLLDYTNPSAFYLTRITLGIDWSGISDGEVLSYTINVDDQALFVEKLVVLVNNIGIQPKMFEFIIPPNSTVKIQATESANNGAISCILTGYRI
Ga0208182_10071607	F010737	AGGAG	MVTTITRTYDSTPTDKTYFSLTDNMSSSSLGNIQTPQGSSRISRIDVAVDAPDTKGFVLACRLLGSNMSEQNLTLAGSCGDVADAGGTAQFNMVPTNFSVAGVNNIDLQVAFQFTSGTPTASSLSVTLYFE
Ga0208182_10071608	F005580	AGGAG	MRKSIPHPSVTGMASGLAIASYLNAGKSINGKFQAEGVIKDVTDGQLGQAFTTLASNAIDMIGTETGRKTLVGASVVAIAGAFARKQFPSLKLGGSRLYFRL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208182_1007160

Overview

Ecosystem & Geography

Associated Families

Sequences