Scaffold Ga0208182_1007072

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1007072
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3467
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003616	Metagenome	477	Y
F038477	Metagenome	166	Y
F043987	Metagenome / Metatranscriptome	155	Y
F047719	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10070722	F047719	GGA	MSIITEETDILKTAIRVIKIEKFQRFCLKCDKILPTKIKQNYAHNCEKPDFLL
Ga0208182_10070724	F043987	N/A	MNKNFLKLPSEHLWILTKREKKGLLTELKRRVEVLS
Ga0208182_10070726	F038477	AGG	MPVHPHVSGGLQKLFNYFKANEIPRDILISVGSAIAGAFVFDRILRRDEEEDEE
Ga0208182_10070729	F003616	GAGG	LIWSEKLGHEIGTYNSLGGLRINPKPFIHSTLNTIVTCRICKGTGLNAITHENGLVTLNKCVLCKGIKHRSNKI