Scaffold Ga0208182_1006625

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1006625
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3616
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005319	Metagenome	405	Y
F005551	Metagenome	397	Y
F005580	Metagenome	396	Y
F010737	Metagenome	300	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10066251	F005580	AGGAG	MRKTIPHPSVTGMASGLAIASYLNAGKSINGKFQAEGVIKDVTDGQLGQAFTTLASNAIDMIGTETGRKTLVGASVVAIAGAFARKQFPSLKLGGSKLYFRL
Ga0208182_10066252	F010737	N/A	MSVTTITRTYDSTPTDKTYFSLTDNMSSSSLGNIQTPQGSTRISRIDVAMDAPDTKGVVLACRLLGSNMSEQNLTLAGSCGDVADAGGTTQFNMIPTNFSVAGVNNIDLQVSFQFTSGTPTASSLSVTLYFE
Ga0208182_10066254	F005551	GAG	MTLGPSKSVSRAKDGKIYGWSGSYGLTSSAVTLLDYTNPSAFYLTRVTLGIDWSSISAGEVLSYTINVDGQALFVEKLVVANANIGQQPKMYEFIIPPNSTVKVQATESANNGAISCILTGYRV
Ga0208182_10066256	F005319	AGGA	MTDATFAAIWILSFGLYLLIYTYWIPLRTQEKIESWLKSEQSDETLLMSLEVITKKIREQMLIDFEEFMLPQARESFQKFWSGAMGHAAKELKNSDEGSGLSLMHSITKELENQPYYIQMLGAKLLPAITEAAKKQPIGTKEQILGMGLQK