Scaffold Ga0208182_1005752

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1005752
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4003
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008778	Metagenome / Metatranscriptome	328	Y
F035959	Metagenome / Metatranscriptome	171	Y
F051056	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10057522	F008778	GAGG	LSRSGALAQIDTLLAAISDPAFVAVYRGEPLAIAGTPVLAYWLTGRRESFETLGDVGSVVTVTVRAYFRMQDSADVRESIEEEVWDAMYQIDSQLRSDADLGGNVTDSSVGAATVGYTNMSGGVFRTVTVPYEMELMGEVTITP
Ga0208182_10057523	F051056	N/A	MAEPITTTFKLKGPMFDKPTQISLGFAEAVNRGLLDLATIEGSNRVKEELYPGHGRITANLRNHIGASIVRDYVAQIDAGEAQYGANLIYSNWVEGIGTRNKTSVFKGYGMFANAHAHMDNNPQLYEKYIGDALIEAFD
Ga0208182_10057525	F035959	GGAGG	MPKAKALVNVTFGATGESYELGETYNVPAETLKRYPDYFKKAATKPKTKQAETEENK