Scaffold Ga0208182_1005704

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1005704
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4028
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023449	Metagenome	210	Y
F038274	Metagenome	166	Y
F070566	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10057041	F038274	AGGAG	MASEYRLDKHNGEYVLVSSDSSKPTIRLGTDDLEIAKARAKPHMNFL
Ga0208182_10057042	F070566	GGAG	MSPKLNFTEEMWNKTASIFEGVQVIESKEMGKPIRYYVFPSKEGVPIITLHDDEEEILKDRKLHKRVIGEIINKVTEEL
Ga0208182_10057048	F023449	GAG	MKWKIDKDVKIPPSYYSKNSQYRELINNMEEGDSVGELTQNQSTALAQLMRKNGIKAVSRKMTGSKADVNETVYRVWHDGPLETAEEQGKQRIGSPTNTVGITPDILQQAEAHEDKHNIVEDTREVFKIVNEELAEIKKKEKGK