Scaffold Ga0208182

Basic Information
Taxon OID	3300025251 Open in IMG/M
Scaffold ID	Ga0208182_1005310 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025251 Open in IMG/M

Scaffold ID

Ga0208182_1005310 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4250
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4250

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (75.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	43.29	Long. (^o)	8.1	Alt. (m)	Depth (m)	2535
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea

Coordinates

Lat. (^o)

43.29

Long. (^o)

8.1

Alt. (m)

Depth (m)

2535

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003481	Metagenome	484	Y
F006447	Metagenome / Metatranscriptome	373	Y
F009425	Metagenome / Metatranscriptome	318	Y
F022755	Metagenome	213	N
F028313	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100531010	F006447	AGGA	MTLFEKICRMVGDRRIPSPRLPAFKMFRVGFANRHVSTVVVLAIVVSAAAVSVGLYFAIKDVASSTYNWPEPAEYQVTTAGLQTMGKKNKDYPDGTESQTLSIRLGDGARISTLRINATSLGRAGITEAFDIRPASVGVTGAKAFLFVGTMTVTESSFPSFSMSESQVANLTTGMKCDGHTMSATVSPSVPEQVLSSERLSSEYLVDNSIVDRVQVFITGPNGAYVNQLILSGVKAHTGSLNLNRMRIGSLTMGSSNLIGDGSGVDQASCIIQASTEAKNITNSITDTPILVQ
Ga0208182_100531011	F003481	AGGA	MTTPADDALQEELRLAREELARLKATDDKSEKIQMTSGDIVRLVIAAPVVFTWLFLGSRIIISATTSQHVLSNVEPLVMTLSILTIPVTGILQSLFSAPGQNGK
Ga0208182_10053102	F028313	N/A	MITKPWELEEAELIDGLCQRYSCLPSQLMAEDVTLLRMVAIVQEGQPESDG
Ga0208182_10053103	F022755	GGTGG	MPQTKKGFRIPDQTAHITFSGTDYDGAEIWVKLNVSFAHYIALREAAEGDDQAKMAELFGGEVLMEWNLEDASGEPVPATGDGMLQIPLSLAMLIVQHWIEAVSAVPVPLEPPSGDLSTLAAASTATGE
Ga0208182_10053105	F009425	AGG	MTSRGLLTHYVLNRPRDHWREVSCLEIGCVNFANGWKTILPANDIANIEMIRRSNMGFREEREDGLVVFVFSPGQECFTGQGGGHRVAVERDPILTRDNRVMEPLEFMDNWNDHQYRRSVNG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208182_1005310

Overview

Ecosystem & Geography

Associated Families

Sequences