Scaffold Ga0208182_1005150

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1005150
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4336
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024528	Metagenome	205	Y
F038853	Metagenome	165	N
F053553	Metagenome	141	Y
F090253	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100515012	F038853	AGG	MSKDKFHFGATSVMREVPPGQSAVIKFNGKLEEIDTEWGPKMKYPILLFSHPSYESISKEGIETVWQSNSQAARDLAAALEQYPGSELSDAFHKKNWKLTRTEEGTYFLDVIL
Ga0208182_10051502	F090253	GAG	MVARRRKPRRSRARKTFSVPLIETGAGLALLAQSDAGTHLKAMLEGNVQQGLSGLNSSIQANKNLMIKTLASAFIAKQVVRGFGGSKILARIGPVVARA
Ga0208182_10051503	F038853	AGG	MSKDKFHFGATSVMREVPPGKTAVIMFNGKLEEIETEWGAKMKYPILLFSHPSYESISKEGIETVWQSNSQASRDLATALEQGIKELSEAFHKNKWELTRTEEGTYFLDVIL
Ga0208182_10051505	F053553	AGGAG	MDLGSLLVLLKLADQVGFTVSPKQTKPRPPTSKAGVRPDCGPGKKAILQFDQWVCVTDFD
Ga0208182_10051508	F024528	GGAG	MPKKKLTKAQVKRKIKTCSNAMYDMILDKMGHANSDVPMSLPKLMEMHKLLQNAAKRMK