Scaffold Ga0208182_1004473

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1004473
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4772
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000730	Metagenome / Metatranscriptome	917	Y
F001606	Metagenome	664	N
F001712	Metagenome / Metatranscriptome	648	Y
F001992	Metagenome	607	Y
F043987	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100447310	F001712	GGA	MAASAGQPIATRAQGFINSLVGRISGYNPFPAATGGAVPQTISIDGMFNKWSGIGLGAWLYGMLPVKQLPQKSKAKTLGKALLSGGVLGGLFSTGNPHNTNLISSSPSPALTVTSSEVSY
Ga0208182_100447311	F001606	GAGG	LTYGYDDVTFTSTTASSTAEVQLNDGTSLSAPDPAHAFNAVVPYQMELGAFTVDESLLTAFRIQSDDVAVEPKKFVLPNVNTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYAQPLTQNTAAAGVGATVLYDTVSTNGAEQYYTRPTNETAAATAINTRTQGGDMTIQGGNEITGLYTVVSGATATASQHDVGYSEFISPDFNTSMPYRIAVQPTATGLGSAANAITGGNGIMEYKMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRYSKN
Ga0208182_100447313	F000730	AGG	LVSELIPPEIIPLVWFSCISVTVYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLITNAPRILHEIDKQIAEQKAQGVSDDQMKGLYQKKQLLSLVADNQEVINIIGKPIIKKLLGFVKAI
Ga0208182_100447314	F001992	AGG	MAVQKLLLQEGLRQTKKYSVSVLGYDFIGLAMRLGLFLTVGVLIQAYFTATIKGGSWLNSVAGFFNIKFPDTLPEWLTKLFTTGYNGIAFWQILQVTAILLVIVEYMQYDRMLKEKDQKANATTQAVFLIIAIALSLMVFPQTIQKIREMRILQQ
Ga0208182_10044732	F043987	N/A	MNKNFLKLPSKHFWILTKREKSRLLTELKRRVEVLS