Scaffold Ga0208182_1004421

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1004421
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4809
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012032	Metagenome / Metatranscriptome	284	Y
F019329	Metagenome	230	Y
F039173	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100442111	F012032	AGGAG	VTKEEFKNRVKSGFFSCEWKKNNGQVAKVKRGILGINAFRFTNEQTRESIREHNDYVLAFRVGNGLLPQHRRWVNINPATVIKINGVEV
Ga0208182_10044214	F019329	AGGA	MAGIGQFLFCNVASIVIYLLKSFFYFRTGIKSGATVTHLLINSYISTLYYVAPMCHYSRQRKALFCFLENKMSKYITIPGVYGW
Ga0208182_10044218	F039173	GGAG	MDQDLIRVLEKIANALEENTTILNRIADHYDGVVPVMTRNAKRVEEAHNEVEDNRSPLDRMYEGLFKPQEN