NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208182_1004421

Scaffold Ga0208182_1004421


Overview

Basic Information
Taxon OID3300025251 Open in IMG/M
Scaffold IDGa0208182_1004421 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4809
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.29Long. (o)8.1Alt. (m)Depth (m)2535
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012032Metagenome / Metatranscriptome284Y
F019329Metagenome230Y
F039173Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0208182_100442111F012032AGGAGVTKEEFKNRVKSGFFSCEWKKNNGQVAKVKRGILGINAFRFTNEQTRESIREHNDYVLAFRVGNGLLPQHRRWVNINPATVIKINGVEV
Ga0208182_10044214F019329AGGAMAGIGQFLFCNVASIVIYLLKSFFYFRTGIKSGATVTHLLINSYISTLYYVAPMCHYSRQRKALFCFLENKMSKYITIPGVYGW
Ga0208182_10044218F039173GGAGMDQDLIRVLEKIANALEENTTILNRIADHYDGVVPVMTRNAKRVEEAHNEVEDNRSPLDRMYEGLFKPQEN

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