Scaffold Ga0208182

Basic Information
Taxon OID	3300025251 Open in IMG/M
Scaffold ID	Ga0208182_1004404 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025251 Open in IMG/M

Scaffold ID

Ga0208182_1004404 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4822
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (78.57%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

4822

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (78.57%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	43.29	Long. (^o)	8.1	Alt. (m)	Depth (m)	2535
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea

Coordinates

Lat. (^o)

43.29

Long. (^o)

8.1

Alt. (m)

Depth (m)

2535

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047715	Metagenome	149	N
F064782	Metagenome / Metatranscriptome	128	N
F067816	Metagenome / Metatranscriptome	125	N
F088726	Metagenome	109	Y
F095325	Metagenome	105	N
F099127	Metagenome	103	N
F103082	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100440412	F064782	GAG	MDLKAEVVLKNIRKEIKKIRDRNRKMKNHPYAENTMVMIGLMRAVEIIEGLRNEEMEKLIDWRKEQKKLISN
Ga0208182_100440413	F047715	AGTAG	MYIDYCPTCTVDKDDPVLLKSYGEAYKDIMSSTVKMEWFMKCPRCEQLFDGGDLYVEREHGLKSRSGIKEY
Ga0208182_100440414	F067816	GAGG	MTMDVYYDDKTGSIPAVEVDIILVLADYESANLSAPSARREIARNVHRMLLAKNYVVRQKQDSRT
Ga0208182_10044043	F103082	N/A	MKNPTVARKKKRPTVKQLAGDVESLWNGMMYLDKNLTAIQRYFEEYLVMKKDVEPFLEHFEGRIEDARNKKEKGEDNENN
Ga0208182_10044044	F088726	GGA	MNKQDMMGHALIKFSESEIDLILTALYNTEKINIPRTDAKWKRPYTNLIKELLHIKETIEKEKEKQQ
Ga0208182_10044046	F099127	AGGA	LTDSPAYYDLTGDSDRGKLPAGNYEAIIVDMSTVADVKCGVFIADVFKPVYRVANGEHKNMEVIDNGIFRYKQVDGYEYESNKNWGFAKFMQLLGTYSKKDGKVNLPYITKRDVSHKRVRIMVWDKSFINETSDRISYPVARAISLINEVPF
Ga0208182_10044049	F095325	AGGA	MNEEQQPDWDNINRGKVRHFFALELYKYKLRNSDKAHLKPTEVGTIEMYVEYVMNGADFKDVMKEKSALELMSRKECEDIITGRLSDIESVTAEEHTRAIIHLEANGLKDNDLKAVLEALDAGKINQGNLTASIDKISNIKSEYDKE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208182_1004404

Overview

Ecosystem & Geography

Associated Families

Sequences