Scaffold Ga0208182_1003325

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1003325
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5966
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001136	Metagenome / Metatranscriptome	767	Y
F002506	Metagenome	553	Y
F017321	Metagenome	241	Y
F029465	Metagenome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10033251	F002506	AGGAG	MTNEVTTTENKSVNNVDISSVIKEVIEYTKDQATVTDLKHIISSVPKSDSMDWKLVSGVLMNSLVEWVVENKDNDDVRSLELIQHLQKDIGYLLKRLGLAQ
Ga0208182_100332516	F029465	N/A	MRMETKQSLYDRLAKEKERLGGKALRFPKTKQELLDRKRWERIHIILTRRYEYGIDSYLDDMRRQDHFDEIATIKNIR
Ga0208182_10033252	F017321	AGG	MTKEQFHDIVKLGFFSIKWTKNNGEQGHIKRGIIGQNGYRFTKSGEVREHPNYLLVFCVSNKGDHGWANVNPDTITEINNVSYTQ
Ga0208182_10033254	F001136	AGTAGG	MVVDEHISHALNRIADGLEENNEVLKRIANHYDGVVPVMTRNAKRAEAMAEDQEQTFAQGIKNIFSPQEH