Basic Information | |
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Taxon OID | 3300025251 Open in IMG/M |
Scaffold ID | Ga0208182_1003279 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6020 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (71.43%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea | |||||||
Coordinates | Lat. (o) | 43.29 | Long. (o) | 8.1 | Alt. (m) | Depth (m) | 2535 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F018619 | Metagenome | 234 | Y |
F047907 | Metagenome | 149 | Y |
F065679 | Metagenome | 127 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208182_100327911 | F065679 | AGGAG | MLKETDGEIRRLGAYHTGIETKVVGARMPVDKIERVRAVFAKQGLTMSEGIERLIDTQLIRDR |
Ga0208182_100327914 | F047907 | GGAGG | MTVVRCMVPGTYLVRNETEPIPFGQTESSFSVVVHHYERFGWVCERCGYSARSTRSDCKHIEAAKASRS |
Ga0208182_10032792 | F018619 | N/A | MAWTTPKSWTSSMVTSAILNAQIKANEETLSTHAHSGAAGNGSATLSGVSLSALAVPVLADQSGNPGTAGRLQRNGNNLVYYGAALVGLYADAVAGTASLRTLGTGSTQAAAGNHTH |
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