Scaffold Ga0208182_1003180

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1003180
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6151
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F008691	Metagenome / Metatranscriptome	329	Y
F025299	Metagenome / Metatranscriptome	202	N
F026289	Metagenome	198	Y
F040141	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10031801	F025299	AGG	MIVEEIPFFVEFVIIGIVLGFGYGFTKLFLNHAKDKNKIRRSERKAKEANSVEDEMDKYLNNIPAITQHLEIELMNLKEKGATPEQCKSLESKLDLARKAQQYEMPIRMFGKP
Ga0208182_100318012	F040141	N/A	MRCLSHEFIFKTDKCQKGSYLFMQKTRICYYCMRYLKKNYGITESDLLKDKFYKKFISTDKDFLQTIDNF
Ga0208182_10031802	F002100	GAGG	MSFRPALIKPTYDIANFGHDNSLPLNCLSGSTVTLTPSSATFVQVLEDSRVPIDEVDMFITDSDKMAMVHAGNNTDYDETWTWEPDMSAQAYQISFNFAVGMKVSAYTSGNFKISNVQVVCKQIGGGEGDFVYLNKTIDPGMTNMGATGEQVAVINFSTSVSAKVFDKPLTFQIKVNTDSGTGTYQTGIIPLFCYLSVAVPKTWTTSSVLMHIHADLAHAFPIFRDEDNMNRIDTGIGL
Ga0208182_10031805	F008691	N/A	MASLAGYNVKEEATEVKKNLFENRHTFVMLVVAGVVGGAITRFVIPKSITEGSVFSRFRSWFGYGQEEYEEEE
Ga0208182_10031806	F026289	GGTGG	MSLKQEKRSDRNEDEVFIDTLVKMLAEPHKDLIWNEKFKITVRKHFDI