Scaffold Ga0208182_1002980

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1002980
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6423
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000730	Metagenome / Metatranscriptome	917	Y
F001992	Metagenome	607	Y
F030782	Metagenome / Metatranscriptome	184	Y
F032306	Metagenome	180	Y
F033074	Metagenome	178	Y
F046427	Metagenome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100298010	F046427	AGGAG	MTRPKIQNICDFCGKEIAIDAQEYTAQFSQKGAGKGKFVKASNKADICHPCFLEVCKTGYKPDWVTLRKNDESGKWEEVEEE
Ga0208182_10029802	F032306	AGGCGG	MSFSQNLGHISQLGKIRKLPRLKLASTLNTWVTCPVCRGGGINSLPHQNGQVDLIMCPHCKGKKKYFNNDSQ
Ga0208182_10029805	F001992	GGAG	MVAAGVALMGARAGLKASKQYSVSVLGYDFIGLAMRLFLFLVVGVLIQSYMTATIKGGSFLNSIAGFFNIKFPDTLPEPITKLFTTGYNGIAFWQILQISAILLVVFEYTQYDRSLKEKSEKPNATTQGLFLMIALGLSLMVFPQTIQKIKEMRILNGQT
Ga0208182_10029806	F000730	N/A	MMFSDLIWKGCQHLVNEILTPEIIPFIWFGGIAITIYVFFHKFSDVIKEKFRQTNLTRRKEERSGNTDGQVDDLISGAPRMLNEVNKIIQEQKASGVPDEQMKGLYQKKQMLELVSNNAEVINIIGKPILKKALGFMRSI
Ga0208182_10029807	F033074	AGGTGG	MPHDTTSSLRVPSNVKSIPVWNVGDYGADLALHLTSVGFTEQQITFSSSAITRSLDEGGQPLDAIPHVYSDTDTGLILHEGNDSQFSTDYVFNSDMPAVIYKTSINVCFGLNVSAYTSGSYNLGNLIVAITEQGGSKRNIYTNTFASGATNLGATGTSLHWFTVDIVEPFQVFPNQPITISLTLDSTLATGTSQAGIVSVAPYVNTAVMKSFAESAIIFHAHADLAHADDVFRFNMERVSTLGQ
Ga0208182_10029809	F030782	N/A	MRRRTSRRAYTKKRISSGIKSQWSKISAGAGALAAVSNITSQDMAASTGQPIAARAQNFANSISGRIIGFTPFKNAAGANTPQTISLEGMFNKYTGIGLGLLGYAMIPAKILPHKAKARTLGKSLFGAGLISGIFSPSGNPHSHNMLTNTHSAPAIPSAGVT