Scaffold Ga0208182_1002268

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1002268
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7948
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060978	Metagenome	132	Y
F067836	Metagenome	125	Y
F079215	Metagenome	116	Y
F087321	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10022681	F087321	AGGAG	MTLDDVFRIALKHFPLCHVGEDTEGEVVIFTGMMVDENQELREM
Ga0208182_100226810	F067836	AGG	MQKKPKTGDLFCRGTKFDFELVPLKAHRAAQCITILHGRLGLADGGLCGLAIDYGQLVGGGFGFNGENKQRRKIWKVKGT
Ga0208182_10022684	F079215	GGAG	MQNLHSAIVSMPSDRDARPVDNFEHLTIEYGGYAWPVKVPKGEFAQAHQTMTRVADTDGV
Ga0208182_10022685	F060978	AGG	MKRKTKKMERGMIEFGADCITITIESEPWKVGRIHSVNKAGAGKHKDRRTKRNRTRADKNRNAIRESM