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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025251 Open in IMG/M |
| Scaffold ID | Ga0208182_1002244 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8005 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (50.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mediterranean Sea | |||||||
| Coordinates | Lat. (o) | 43.29 | Long. (o) | 8.1 | Alt. (m) | Depth (m) | 2535 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000730 | Metagenome / Metatranscriptome | 917 | Y |
| F032306 | Metagenome | 180 | Y |
| F033074 | Metagenome | 178 | Y |
| F046427 | Metagenome | 151 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208182_100224413 | F033074 | GAG | MPHLEQNGALRVPSNIKVIPTYNAGDYGKDLPLHLTSVGFTEQAIVFSTSTLTRSLDEGGQPLDALPHVYSDEDDGLILHEGADTDFDVDYVFNSDMPAVVYKMSINICLGLNISAYTSGNFNIGDLTATITEQGSNTRNIYTNTFLSGAANQTGTGTSLHWFTVDVVQPFQVFPNQPITINLKLTSTRGVGTSQAGIVSIAPFVKTAIMKSFAESCIVFHVHADVAHADDVWRFSMPRISNLGQ |
| Ga0208182_100224414 | F000730 | N/A | MSGVSQCRGFQILVNDILPPEIIPFVWFSGIAVTIYVFFHKFSDVIKEKFRQTNLSRKRAETTGKTDDQIDNLIGNAPRILNEINKQIAEQQQSGVTPEQMKGLLQKKQLLELVSNNQEVIEILGKPLLKKVLGFVRAL |
| Ga0208182_100224418 | F032306 | GGA | MFSQNLGHFTQLGQYKKLPKLFLHSTLNTWVTCSVCRGTGQNSIIHGNGQVSLRMCPHCQGRKKYFNGVN |
| Ga0208182_10022449 | F046427 | N/A | MTRPKIQNICDFCGKDIPVDGQEYTVQFSQKGAGKGKFVKARNKGDVCHPCFLEVCKTGYKPDWVTLRKNDESGKWEEEEE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |