Scaffold Ga0208182_1002104

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1002104
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8461
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F000730	Metagenome / Metatranscriptome	917	Y
F001606	Metagenome	664	N
F001712	Metagenome / Metatranscriptome	648	Y
F001992	Metagenome	607	Y
F038477	Metagenome	166	Y
F043987	Metagenome / Metatranscriptome	155	Y
F047719	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100210413	F038477	N/A	MVKMPEYLKKAIAYFKNNEIPRDILISVGSAVAGAFVFDRILRRDEDQDEDS
Ga0208182_100210415	F043987	GGA	MNKKFLQIPPEHFWILTKREKSQLLTELKRRVEVLT
Ga0208182_100210417	F047719	GGA	MSIIIEETDILKTAIRVIKIEKFQRFCLKCGKILPTKIKQNYAHNCEKPDFLL
Ga0208182_10021043	F001712	GGA	MAASAGQPIATRAQGFVNSLVGRISGYNPFPAASGGAVPQTISIDGMFNKWSGIGLGAWLYGMLPVKQLPQKSKAKTLGKSLLTGGVLGGLFSTGNPHNTNLISSSPALTVSSSEVSYT
Ga0208182_10021044	F001606	GAGG	MTYGYDDVTFTSTAASSTAEVQLNDGTSLSAPDPAHAFNAVVPYQMELGAFTVDESLLTAFRIQSDDVAVEPKKFVLPNVNTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYAQPLTQNTAAAGVGATVLYDTVSTNGVEQYYTRPTNETAAATAINTRTQGGDMTIQGGREITGLYTVVSGATATASQHDVGYSEFLSPDFNTSMPYRVAVQPTATGLGSAANAVTGGGGIMEYKMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRYSKN
Ga0208182_10021045	F000704	AGGTGG	MPHDTGEIQPSKVKSVSVYNVGDYGEDLFLPFTDVGLTETSITFSTATVTRDTDDSNQPMDDFPAIYSDTDTGVLLNEGNDTAFSQTYVFTPDMTAICYALHLVFPAAVICSAFTSGTLNIGALHIKLTERSTNDRLLYENTFQSGAANLTGTGTSLHFFQQDVVETILVRKGNPIDILVELITVKTGTNTRQEGYVTPAPYLKTAVMKRFTPAGIALHLHADLSHADGVYKYTKNRVSTLGQ
Ga0208182_10021046	F000730	GAG	LVNEFIPPEIIPLVWFSCISVTVYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLITNAPRILHEIDKQIAEQKAAGVDDAQMKGLYQKKQLLSLVADNQEVINIIGKPIIKKLLGFVKAI
Ga0208182_10021047	F001992	AGG	MVVQKLLLQEGLKRTKQYSVSVLGYDFIGLAMRLGLFLTVGVLIQAYFTATIAGGSWLNSIAGFFNIKFPDTLPEWLTKLFTTGYNGIAFWQILQVTAILLVIVEYMQYDRMLKEKDQKPNATSQAVFLIIAIALSLMVFPQTIQKIKEMRILQNG