Scaffold Ga0208182_1001817

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1001817
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9366
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015401	Metagenome / Metatranscriptome	255	Y
F019030	Metagenome	232	Y
F029244	Metagenome / Metatranscriptome	189	Y
F030887	Metagenome	184	Y
F062166	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100181716	F062166	GAG	MIKGTKTVTIHNFTFEYIPSMRLMNVTSPTGGIEIHHNLSYEQANEIVGEILEKNMNCS
Ga0208182_100181721	F015401	GAG	MKTTETNILNVMYCNHRILIDKITEYDYNGDVATAKKMCTVIRYHDDNATPMIFNVSPYESLVDMHGMAKAWIACGCPSDSDTIGGVPSKWTKENLHAWVAG
Ga0208182_100181722	F030887	AGGA	MNVRVIKHINGNYDTFANFATVQDALDYMRRLGAVNDSWYIIDANDNRLRLNDNDKLVVFNSLIGY
Ga0208182_100181724	F029244	N/A	TMTRISDLEFTAEMLSDVWKGHSVDLPKTDARRMVSNPKAAADYIAEYGDVEIVLNTEYAPHWEVAAFKVGRDEYGKLKQAYCNQFGSN
Ga0208182_10018174	F019030	GGAG	MTGNRKTYAVQRSTLEAIGIELVIAQREYEKQLNMHTHLITGECELIEADKVFYEEQVEYLTGLIKHLNEVTKNELLLI