Scaffold Ga0208182

Basic Information
Taxon OID	3300025251 Open in IMG/M
Scaffold ID	Ga0208182_1001587 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025251 Open in IMG/M

Scaffold ID

Ga0208182_1001587 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10328
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (78.79%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

10328

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (78.79%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	43.29	Long. (^o)	8.1	Alt. (m)	Depth (m)	2535
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea

Coordinates

Lat. (^o)

43.29

Long. (^o)

8.1

Alt. (m)

Depth (m)

2535

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047715	Metagenome	149	N
F059867	Metagenome	133	N
F067816	Metagenome / Metatranscriptome	125	N
F088726	Metagenome	109	Y
F099127	Metagenome	103	N
F103081	Metagenome	101	N
F103082	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100158715	F047715	GGA	MYIDYCPTCTTDKDDPILLKSYGEAYKDIMSSTVKMEWFMKCPRCEQLFDGGDLYIEREHGLKSRSGIKES
Ga0208182_100158716	F067816	GAGG	MTTDVYLDDKTGSIPAVEVDIILVLADYEGANLEAPSARREIARAVHSMLLAKNYAIRQKQGSGT
Ga0208182_100158720	F059867	AGG	MISVPDINESQWTTWMIKTPEDEAELDKYFPEFFDGKPKIIRKYKEKPKDVKMVADYFKEKGIEDPEGSAELFYAHYESVGWFKGKSKIKSWRMCLNSWDFKKKGDVQAGQVSRSPMYKLECVECGFASETDRKDTRMVCRRCEHRPLMVVTNLIK
Ga0208182_100158727	F103081	GGA	MKKITLKIDDDILGRMRSDLSIKMMGGNFAGTIDAFIKKLIDQIDGGNKEWHCKYKNKK
Ga0208182_10015876	F103082	N/A	MKNPTATKKKKRPTVKQLAGDVESLWSGMMYLDKNLTAIQRYFEEYLIMKDDVEPFMEHFEGRIEDARNKKEKGEDNNE
Ga0208182_10015877	F088726	AGGA	MDKQDIIGHALIKFSEAEIDLILTALYNTEKLSIPRVKSKWKRPYTNLIKELLHIKETIEKEKERQQ
Ga0208182_10015879	F099127	AGGA	LTDSPAYYDLSGDSGGGKLPAGNYEAIIVDMSIVTDIKCGVFIADVFKPVYRVTAGDHKHMEVTDNGIFRYKQVDGYEYESNKNWGFAKFMQILGMYNKKDGRVNLPYITKNDVSQKLVRIMVWDKSFINEISDRISYPVARAISLINEVPF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208182_1001587

Overview

Ecosystem & Geography

Associated Families

Sequences