Scaffold Ga0208182

Basic Information
Taxon OID	3300025251 Open in IMG/M
Scaffold ID	Ga0208182_1001480 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025251 Open in IMG/M

Scaffold ID

Ga0208182_1001480 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10803
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (68.18%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10803

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (68.18%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	43.29	Long. (^o)	8.1	Alt. (m)	Depth (m)	2535
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea

Coordinates

Lat. (^o)

43.29

Long. (^o)

8.1

Alt. (m)

Depth (m)

2535

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001594	Metagenome / Metatranscriptome	666	Y
F007267	Metagenome / Metatranscriptome	354	Y
F008755	Metagenome / Metatranscriptome	328	Y
F009404	Metagenome / Metatranscriptome	318	Y
F015879	Metagenome	251	Y
F078824	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100148010	F007267	N/A	MKLKIFTCPECKFRKFESINALNVHIGKSHSVNYKISMVNNKPVMKIKTRSTVQYLKK
Ga0208182_100148012	F078824	AGGAGG	MLETGLTHNATVQLLHQATIQLVQDNPERFEQYVKFFEFGCMYLQNESDEIPEVEKNER
Ga0208182_100148013	F001594	GGAGG	MEKLSKDEYLDQLDPDNLNLEKKDLINFCHGCINEWKANRISNFKYIVAMELMIGAVRITPEDVMKTVWKKILVWFWDLQYKNALAENEGMLRRFREIGSG
Ga0208182_100148014	F008755	GGAG	MNKSRVARDLWRKVFNDNLINLSDGDARKQVVREFLNDPVNKKAGWKSKDARFFRLGFQKVAKENNFNVMNVGVTPTPSRSKTNKGSMNINVKSKQKNPSPLGESIKPPTEQEKKFGAGAIPQTPQLQQQQAQATYYSAQSVGQIFETLFNIFSTRLGCSPLSQNERIALGESWTPIFNEYFGGENSKWIMPAIITLPIILSRVAEVQKMKKEKELAELYGMDKVPKEEPVKKKSAWEDMSHGKTKQG
Ga0208182_100148015	F009404	GAG	MSDEPEHIQPKGESLVKHCPICGVEFDEIVLTNRWLKCDSCETVFQVKVKTGE
Ga0208182_100148020	F015879	N/A	MKKDDVIIITCNVCGAMSHAIKKDDSIANWSGNYKMKDEFVLCKICFGDLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208182_1001480

Overview

Ecosystem & Geography

Associated Families

Sequences