Scaffold Ga0208182_1001436

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1001436
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11054
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036930	Metagenome	169	Y
F044728	Metagenome	154	N
F046014	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100143616	F036930	AGGAG	MTEYTHLVEETRRQEAFREWKNKPISLHLNNGKMETKYQDGRIEIEDTSTGKKTYDFPEGYEGEKYRESLFNKFLRVFTA
Ga0208182_100143618	F046014	GAGG	MIRKRVYLNKPQAEGLIQIFKRNQLLDLLVYVAINTKNKSPHYKLCIDCPIDTHPRLSNKLQDVLHTLVDRHSNALKQLEWEEYDDAETPVETLGLTPDFKEYVEEKEKEE
Ga0208182_10014364	F044728	AGG	MMSFEDFLEHATIEDTVAEILREVHPVLERKVEDTQASPWEVATALMIELSGISTAAELDRTVLLNLLAFLIDTTKGSISQFDDILPHASITRH