Scaffold Ga0208182_1001250

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1001250
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12280
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (47.06%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F002150	Metagenome	589	Y
F003270	Metagenome	496	Y
F008596	Metagenome	331	N
F008691	Metagenome / Metatranscriptome	329	Y
F012984	Metagenome / Metatranscriptome	275	Y
F015739	Metagenome / Metatranscriptome	252	Y
F025299	Metagenome / Metatranscriptome	202	N
F031531	Metagenome	182	Y
F040141	Metagenome	162	Y
F089026	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100125011	F031531	N/A	MSYDPYTNSYYDLRDGQLLAKMEQETKSEFKDLKTLSLEKDKTLVVKQITNEAWSDETKARGVFFIEEKNRDKKGITLTKSDCGKLAIILKEISD
Ga0208182_100125013	F040141	N/A	MRCKSHIFIFKSDKCMKGSYDFMRKTSICYFCMRQLKKMYGLTESDLLKDKLYKKFISTDKDFLQTIHNF
Ga0208182_100125019	F008691	N/A	MASLAGYNVKEEATEVKKNLFENRDTFVMLVIASVVGGAITRFVIPKSVTEGSVFSRFKSWFGYDEDDDE
Ga0208182_10012502	F012984	N/A	MDQSIFEPLSELQKQQYLTELGLEPVLSYYNNEIKKHSRVCFKSMELRKKRDRCFKLMREEYRELC
Ga0208182_100125021	F003270	N/A	MAKKRRRRSSKKRNGSKSIKSMIRQIVNKGSAPLAFWQQLSEKDYQVLNADGNYRALDYLGKLKVASNILTGSLTGRVLFSDQYNPQPGGQPRINPAGIINKWVGIGVAGKLYGKIGKSMKLPEASMIDKVGSKLIFGGAVGGFFDPPGNPGGYVSTANVTPNVMVQNRSQTNRAFATAQRNRSFVPVDSFDYSTGSAFR
Ga0208182_100125022	F008596	GGAG	MSGAWDIATASSLGTGVAKTTINGGANLTKPTQAVNLVETVPYTVSSGAYTAGESIALTAYLDSFSVDLLPKRMIVPPVQAGLGTLINIVAPILEAYECNTGLQEGATSQFIVSGQAQVANTVAPLMGMALHYSTTPPNRPEHFYHKPDDESSFTTATTNAGNDFTINDGMWLEDMYVSVFAGTPTVSQSISGYGTFSSNDFGNSLPLKVPMQPGACGLAGTMTPGNLQLASYHNTHMPMKTSCKISTSFTNDITQSATTRFIMGVGYTKQD
Ga0208182_100125023	F002100	AGGAG	LSQIPRDSFRPALIKPTFNVGDYGHDVIIPLNCITGSATTTLTPSTATFVQVLEDSRVPVDEVNQFITDSDKMELVHAGNDTDFDTTWEWLPDMSFQAYKASFCLAVAMKVSAYTSGNFAISSVQLTLKSVGGGEGDEVIVDKIINPGMANMTGVAEQVAILNVDTKTSAKIADKSVSMQVKVNTTSGSGTYQCGIVPLYCYFGSAVPKTWTTSSVVVHAHADLAHAFPIFRDEDNMNMLDRGGIGL
Ga0208182_100125024	F025299	GGTGG	MIIEEIPYFTEFIVLGIVLGFGYGFTKLFLNHAKDKSKIKRSERKAKEVNSVEDELDKYLNNIPAITQHLEIELMNLKEKGATPEQCKSLESKLDLAKKAQQYEMPIRMLGKPILKKVLNMVDKFGV
Ga0208182_100125025	F002150	GGAG	MVSVAVPGMIASRATKKSGQVLQEQFGYNFIDLVTKLALFYVISFLIAKYMEAVIYFQGGLSTIAGFFGIKLVQADQLPNQWVSLFVDTDQKTYSATPTAPGQFNPPGWDRPYDYGTSEHQQAEPHLFSQKEQQFKFWDLINAIAIFYISWEAYKYWKRGGEDFLTLGIFGLLIAVLSVLSFSRFLNRFSLNRFQEANK
Ga0208182_100125030	F012984	N/A	MDQSIFEPLSELQKQQYLTELGLEPVLSYYNNEIKKHSRVCFKSLELRKKRDRCFKIMREEYQELC
Ga0208182_100125032	F015739	GAGG	MIRPELHTFKWSPKTKSKEDLELFKVLEQLVKDQNITKTQLTRKALNDFIKYNQKVDK
Ga0208182_10012504	F015739	N/A	LIRPELHTFKWSPKTKSKEDLELVKVLEQLVKDQNISKTQLTRKALNDFVKYNKKEEK
Ga0208182_10012507	F089026	GGAGG	MKRSYKDRSITEFNEYSDESIRHFIQVLKQWRDLEK