Scaffold Ga0208182

Basic Information
Taxon OID	3300025251 Open in IMG/M
Scaffold ID	Ga0208182_1000893 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025251 Open in IMG/M

Scaffold ID

Ga0208182_1000893 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16098
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (90.91%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

16098

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (90.91%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	43.29	Long. (^o)	8.1	Alt. (m)	Depth (m)	2535
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea

Coordinates

Lat. (^o)

43.29

Long. (^o)

8.1

Alt. (m)

Depth (m)

2535

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008151	Metagenome / Metatranscriptome	338	Y
F008778	Metagenome / Metatranscriptome	328	Y
F012399	Metagenome	281	Y
F018619	Metagenome	234	Y
F035959	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100089313	F012399	GGA	MVISTNGVGIRPYTVQRRRAVLEFADPEYAGMHIETRLDVDLRTFLDLQTLAGGADADPDGLRAAFRMFGDEILETWNLHDEDGTELTADADGFLTLPPALGTAILGAWTSAATTSGEVSAST
Ga0208182_100089316	F008778	GAGG	LSRSGALAQIDTLLAAISDPAFVAVYRGEPLAISGTPVLAFWLTGRRDDFETLGDIGSRVSVTVRAYFRMQDSADVRESIEEAVWDAMVQIDTQLRSDADLGGNVTDSSVGAATVGYQNMSGGVFRTVTVPYEMELLGEITITP
Ga0208182_100089319	F035959	GGAGG	MAKAKSLVNVTFGATGEVYEMGEVYDVPAALLKKYPDYFKKQSAKPRNKQAATGENK
Ga0208182_100089322	F008151	N/A	RGIRNRVDGILGRHMERQTTSTKAYPFETVDMLPPIETGNMERILEAAYRRVSKRTFSAINDVGVAGTLDWSDKLPTVQRVLTQAPTRAAMIHRTTSKAIGRAVGIGLERGYSIEQLARGVPDDKFPGIRSILGETENRSRLIARTEIMRSQNQTTVGFYKEQGFGYVQADDVDGDPDDNYIDPGDPHGRTCAERHGQVYALDAAQNIDDHPNGTLNWTPMPRGYKPEETL
Ga0208182_10008937	F018619	GGA	MVTAAILNAQIKANEDVLSAHAHSGAAGNGSSTLSGVSLAALTIPVLADQSGNPSTAGRIQRNGNNLVYYGAALVGLYADAVAGTASLRTLGTGSTQAAAGNHTH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208182_1000893

Overview

Ecosystem & Geography

Associated Families

Sequences