Scaffold Ga0208182_1000847

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1000847
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16853
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007012	Metagenome	360	Y
F018077	Metagenome	237	Y
F033759	Metagenome / Metatranscriptome	176	Y
F056665	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100084712	F033759	N/A	MIIKALILSTLLNSDFLAIVQISPVKIEARKRNGKGNKKRRRGGSGLR
Ga0208182_100084719	F056665	N/A	MYETIFICLMAALICLEAERFEPKPIPLGEGDTLMVRIAGYGFCPPYCEIDHNHIGHYKKYNCEELQCEHITISEK
Ga0208182_10008476	F018077	GGAGG	MTVKRMASQLEQLFGRQSEQYLIQIINDGLMDIANKKQGYTVSALTDLEENKRWYELPDSVLGIERVEILDTNSRYIMIPKLSDPHKLLRADTDASNDDLT
Ga0208182_10008478	F007012	N/A	MAILFICHRCNTKVECETKAEMICDCGAYIKDHDDTRNHVNMRNTWSGTTKVEFNHTTMDKDIAERNSR