Scaffold Ga0208182

Basic Information
Taxon OID	3300025251 Open in IMG/M
Scaffold ID	Ga0208182_1000583 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025251 Open in IMG/M

Scaffold ID

Ga0208182_1000583 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22603
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (92.68%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

22603

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (92.68%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	43.29	Long. (^o)	8.1	Alt. (m)	Depth (m)	2535
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea

Coordinates

Lat. (^o)

43.29

Long. (^o)

8.1

Alt. (m)

Depth (m)

2535

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034953	Metagenome / Metatranscriptome	173	N
F036653	Metagenome / Metatranscriptome	169	Y
F045801	Metagenome / Metatranscriptome	152	N
F046426	Metagenome / Metatranscriptome	151	Y
F050428	Metagenome	145	N
F073426	Metagenome	120	Y
F101325	Metagenome / Metatranscriptome	102	N
F103382	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10005832	F034953	AGG	MKQMKLTPLLLLIKKVEKDTPVIITWKDAVDHSDEVTMDTLQVKEVHYDTIGFFLSYKDDYVILAYNKEDDNKTYKGTAMIPCSLITDIRRLTDGYAE
Ga0208182_100058323	F073426	AGGAG	MTRLYIALAVTVFAFLFYFSSKAPVLTSVPKVEKTIDMGIWSESNKGNSLAEK
Ga0208182_100058325	F036653	AGGAG	MTVIYVVISLVFSAFLYEPLWFDTRMHYHHDTYQSLKACKHASIQVDETTGRVCVPKDNHSGHVDLYLTKD
Ga0208182_100058327	F103382	N/A	MNELLITIMLVVPAPNKMVDWTINEVPTQIQLVHEDGTEVSYNATAVPCKYKPRSINEMVFVSPQAYEDNRCYSIFDLSRPLFIRHPHYWHKIELPNKPKDMDYLMEKERVLD
Ga0208182_100058328	F045801	GGA	VFWIEIFLSIWALAAVRLLAIGHKLGPLIGWVGQVLWVSMWIYTSQYGFLLIDIGLAYIYLEAYFRGKRR
Ga0208182_100058331	F101325	GAGG	MQNSSSVDMANVDVKKVAQGMMRVVDSLDSFTKAEKYAILSAVFNCLYINKMMKERSISDVMEIIGKMRRDCKFKQIPEFGGAEKYIKGEL
Ga0208182_100058341	F050428	GAGG	VFTRSLSSKIIIISKLETFFVPLGAVLIMRQYKNDTRLVISDGLLNTLDTIFPNKLPSFLVTEAEIARLVGQQQVVTWIKDKQEELRDQSMEHEGQVTIKGDS
Ga0208182_10005835	F046426	GGAG	MKLRLKLGIVLVCLTFSMGCSILPELVAPAANFAIGFYDHDDYYSKECLWYDEVKLNEKTKKWLMESNPPEVVSKDLAVVSRNNDIYKEVCEREKGVLDKLEDKIERLTGD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208182_1000583

Overview

Ecosystem & Geography

Associated Families

Sequences