Scaffold Ga0208182_1000450

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1000450
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28403
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (88.89%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Associated Families: 15

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001651	Metagenome / Metatranscriptome	657	Y
F003161	Metagenome	504	N
F003481	Metagenome	484	Y
F004651	Metagenome / Metatranscriptome	429	Y
F004769	Metagenome / Metatranscriptome	424	Y
F005219	Metagenome / Metatranscriptome	408	Y
F006447	Metagenome / Metatranscriptome	373	Y
F009425	Metagenome / Metatranscriptome	318	Y
F011621	Metagenome	289	Y
F020998	Metagenome / Metatranscriptome	221	Y
F022755	Metagenome	213	N
F022976	Metagenome	212	Y
F032720	Metagenome	179	Y
F043615	Metagenome	156	Y
F043620	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100045011	F011621	GAGG	MPDIGDICRARDLGMVGGRLYIWAECPVCHLQRWTTTRPLDKGTRRKCQDCVREKSKRVFKIGRAHTIDQV
Ga0208182_100045016	F004769	GAGG	MPGHDQKTTRVQVEVNGFTWRVYGARTGQRWHCHLVELVGPLPLDGPVTQPLRDKIRSALAKALKLDESEIARIPADLILA
Ga0208182_100045017	F032720	AGGAGG	MIIPDYEVGQNVHLKPFPSGADGIRCVCNPDKESGLQAPAITAPELGGCWHGAATRVLRVFQDGGLLLENRHGFVRGARPDEVCR
Ga0208182_100045018	F005219	GGAGG	MTTIRRTCPECGGEMTVELLRRDPHDTPVLFLVCPCGYWEAAPPDIEADLEDRPRMPGF
Ga0208182_100045021	F020998	GGAGG	MQANARTSTRPGYVFDDHIDLMLALFDILDQAAVDYDRSEDVVDDFQAYLKDWARRRDEKPER
Ga0208182_100045023	F004651	AGGAG	MGKELRAMVEAIPDHYFLLDDALLSEMEKVSEELEVIKGVLGRLEQEAYRRMEEKKATSIPSETYICEMETGFKYDQPSFGPLKEIFNEVDLKKCLTPAHTDEVKIEDKWTTATVKSLAVKYGAEALRIVENARMESRGRLKFARREVR
Ga0208182_100045028	F043615	AGGAGG	MTEQAYGERTRWDHRYSEFEQGTLVRQKNGTWRITISRVCGGNNCGPRNGVAHDHRATNTMTEQEAVNLLLDWDHDLEEAKGLANYV
Ga0208182_10004504	F022976	AGGCGG	MALKVKTKDWESGRRWARRNAIATPGVTYTIVRDGRQLSYRYEDGLMYCTGTGKRVKPYHPRWLTASEPMC
Ga0208182_100045043	F022755	N/A	MVAINGTTAQTKKGFRIPDQTAHITFSGTDYDGAEIWVKLNVSFAHYIALREAAEGDDQAKMAELFGSEVLMEWNLEDASGAPVPATGDGMLQIPLSLAMLIVQHWIEAVSAVPVPLEPPSGDLSTLAAASTATGE
Ga0208182_100045045	F009425	GAGG	MTSRGLLTHYVLNRPRDHWREVSCLEIGCVNYAVGWKTILPADDIANIEMVRRSNMGFREEREDGLIIFTFTPGQECFTGQGGGHRVAVERDPILTRDNRVMEPLEFMDNWNDHQYRRSVNG
Ga0208182_100045047	F043620	N/A	MRFLALSVLAGMVAIIGFVSMLVWLYEGPRRLVRLAACYIGFHGRETWGVNPANQNSEPYCRDCRRFLAKAY
Ga0208182_100045050	F006447	AGGA	MTLFEKICRMVGDRRIPSPRLPAFRLFRVGFANRHVTTVVVFAIVVSAAAVAVGLYFAIKDVASSTYNWPEPAEYQVTEAGLQTMGKKNPDYPDGSESQTLSIRLGNGSRISTLRIKDVDLGRTGISRALDISPLTNAVTGATAYLWVGNLTVTNSSFPTFQMETSDVANLVTGLLCDGHTMAATISNTVPDMVLESERLSSVYEVNGSIVDRIQIHITGNSGAFVQNLILDNVDAWNGEAYFSRLKIGTATFNNSNLVGDGSGVDSSSCRIEDSVSARNITNTIQDRPIKVQ
Ga0208182_100045051	F003481	AGGA	MTTPDDVQEELRLAREELARLKATDDKSEKIQMTSGDIVRLVIAAPVVFTWLFLGSRIIISATTSQHVLSNVEPLVMTLSILTIPVTGILQSLFSAPGQNGK
Ga0208182_100045053	F003161	GAGG	LSRSGALDRIDVLLSTITDPAFVAVIRAEPLALSGTPVLAYWVQARTNGWQTLSDIGSTTTIMVRAYFRLQASADVRESIELELWDSMVEVDTKLRSDANLDGNCTDSTVGSATVATLDMGGALYRTATIPFDIQLYEEVTISP
Ga0208182_10004508	F001651	GGAG	VALNNGKNLAAENRRSQVLQMKMAGATETAIAEQVGVSKTQVHNDIHRRLSEVRRDDKEAVQQEYNLQRSRYERLLLRWWSQATGPDDERAAKATQMVLDILRRLDTIGGLIPEKPLIQLQQQNVMVGGVTFADLLREAMDGAGQIVEGEREVANAGTDLAVEN