Scaffold Ga0208182

Basic Information
Taxon OID	3300025251 Open in IMG/M
Scaffold ID	Ga0208182_1000322 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025251 Open in IMG/M

Scaffold ID

Ga0208182_1000322 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37127
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (84.31%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

37127

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (84.31%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	43.29	Long. (^o)	8.1	Alt. (m)	Depth (m)	2535
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea

Coordinates

Lat. (^o)

43.29

Long. (^o)

8.1

Alt. (m)

Depth (m)

2535

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000782	Metagenome	894	Y
F001136	Metagenome / Metatranscriptome	767	Y
F002506	Metagenome	553	Y
F028194	Metagenome	192	Y
F028318	Metagenome	192	N
F038273	Metagenome / Metatranscriptome	166	Y
F043626	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100032218	F002506	AGGAG	MTKEVTTTNDPRNEKPTSVSNVDISSVINEVIEYTKDQATITDIKSAIASVPKANSMDWKLVSGVIMNSLVEWVVENKDNDNTKSLELIQHLQKDIGYLLKRLGLAQ
Ga0208182_100032219	F000782	AGGAG	MTKNDFKSRVKGLFSVRWLKNSGEEGYIHRGILGLTKHIDGEHREHNDYVLVYKVGNGYGEQSRWANVNPNTITHVNGVVQ
Ga0208182_100032220	F001136	AGG	MVVDQSITEALNRIAENQEEMNSILTRIANHYDGVVPVMTRNAKRVEEAHKEAEDSFGHQVRNIFKPQTN
Ga0208182_100032225	F043626	GAGG	MKALQKKKSKKPVFTPSKARLAVIHWLDAQDGEGGWTPIAQVLKHGLAQVYDVGWIVHEDKEKIVIMGSICWEGAEKKELDGGRFCSIPRSWIDKIWYLDKGKEYENVRVQLVGQANPKGKNRKGVQ
Ga0208182_100032226	F028318	AGG	MTKTIVTIAQMSDGKVNPKTELMEKPAWQLGFEDHTADILFRSKMLELLSRGYHKTVENFRRGDVTTNTGGQASFWIVVFQDYEVRLQTNVEIMKIITDGHRNIERESTDESTAKEEVEEAGFYAE
Ga0208182_100032232	F038273	GGA	MSTYNKLLKLKDELKDKPEERPRLRRVMSILMRRYGYGVDDMEEYRWGDFRDEIASVKRF
Ga0208182_100032242	F028194	AGGAGG	MRPEKEDVEKRKSELQKQLDDLTAKISQGRDAIRNMEATINGLQGAIQQCNWTLELFKEKKDE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208182_1000322

Overview

Ecosystem & Geography

Associated Families

Sequences