Scaffold Ga0208182_1000280

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1000280
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40704
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (72.58%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018013	Metagenome	237	Y
F054089	Metagenome / Metatranscriptome	140	Y
F101304	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100028016	F018013	N/A	MSITQFVKLFETVGIPVLTAAAAGYALWWLIRWITGSFKQELNDEHKDIVKAIDILKEELDEETRDTRDQLGKRLEELRIMMIRLIDRVRVLEINFIEHDETVRAAYGLERAVRKKTRHDQVEELKEQIKDAGKTNGNDH
Ga0208182_100028031	F101304	AGGAG	MMAAQKETAIISGKAYWTKLNRKDEYSDKYQLDVGDLSDKSKEVLNSHGVKLKNKNDDRGEFITARTQYLVPVIDSDKKTIDRDTLIGNGSSVRVKVDFNKNHPFAEKYGTSMYLKKVQVTELVEYAKDEFDDDDDMV
Ga0208182_10002808	F054089	AGGA	MALQVNIPLQGGITHNNGYVRVTNARLCRKDNADNWFLMVDVSVYKDADERAKTAPEVVPCPSIDKFKYAYAVGDETGSNLIALAYTKLKTEDVFDGASDV