Scaffold Ga0208182_1000178

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1000178
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56466
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (85.53%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Associated Families: 15

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002601	Metagenome / Metatranscriptome	544	Y
F010920	Metagenome / Metatranscriptome	297	Y
F012033	Metagenome	284	Y
F015478	Metagenome / Metatranscriptome	254	Y
F015480	Metagenome	254	Y
F016058	Metagenome / Metatranscriptome	250	Y
F016410	Metagenome / Metatranscriptome	247	Y
F020018	Metagenome	226	Y
F042373	Metagenome	158	Y
F049685	Metagenome	146	Y
F059458	Metagenome	134	Y
F062817	Metagenome	130	Y
F067827	Metagenome	125	Y
F067830	Metagenome / Metatranscriptome	125	Y
F092858	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100017811	F020018	GGA	MIQITKWLNPEDETWYKGTYITVLEWLMIEKESISRLTGKTTTIRTNSEGAKAVFRKRIK
Ga0208182_100017812	F062817	AGGA	MFQDKMAEEADWKDGMNIFRSRVIEQLDGILEVLDILEREITKLKNKENTP
Ga0208182_100017817	F042373	N/A	MCRITKAQDVYIWGNFAILPKHPYEEQRICNKCAKREHGKRTKLENIINERTKKWLKKQQ
Ga0208182_100017819	F067827	AGGA	MERDGDLGNYLRFNFENAIEIIDKLTKDNNALLDKIEELEAKLNKPITIKNQPISARFHQASKEADAAMKRFTAKLRKELNNAKSKQSQRQPV
Ga0208182_10001782	F016410	N/A	MRKFSSKKEQLEWADKLLRKLSDKHTGGVTPIIKSMITENYIRRLKK
Ga0208182_10001783	F010920	AGGAG	MNEIKTYDVLISYPIKVGAESEEHVKEILMANELLRNAADLTLKITEIKDGKK
Ga0208182_100017839	F015478	AGGA	MRPSLFDQLYYNIDLGTSSKAEAPTQPALTPAQRTPTTNEAGLGQQKAPKEFTGMKFTHSLIKHLDQLYSKMLAGEVKEIASEPEHDSKQKIIEGQTGALVLNEKEAFYNPGNSAVTESM
Ga0208182_10001784	F067830	GGAG	MEKNKLEIVDEIDGKTLAYRTKPSVEIYTTTKEVGFSEFSYSWEEVIAIANKLEGFLEKDLVNVT
Ga0208182_100017843	F016058	AGGAG	MSKKTTETVEEVKTNNVAETVDTDAKAKEAINTLRVQLQEHLRQVDHHRTMATKAQGALEVLLQLHPEEENRSNGEAIES
Ga0208182_100017845	F092858	N/A	MPNRRAIFSSYVIPRESTDLEEGVTKWTIDGAINKTLGSKSTATLTGSQWGEGWSSFQHPEQYWEDCGSDWEDMGEAYNGVLTISAATSLNVDSASASTAVIFLYVKNLGTASNQGLKLSLDGSNYKIYIPSQGSVNIRGDGSTLQMQHVKVDAADQDTSVEFIIAK
Ga0208182_100017853	F049685	GAGG	MDYGKAKSVKDIMSEMLAEWLFKDFGILIDEPSEKEIAETLEEHKKEVLDDGVNKR
Ga0208182_100017854	F002601	N/A	MIKLIVLSVLLNAEEMHAMPPEDTKIEARRRGGKGDKKRRRGGNGLR
Ga0208182_100017863	F059458	GGAG	MIYLEDIKTEAEADAAVAECEIAAIEASEAISNKRNRIMRAERDIKCLQKLCVLRKWKGPQERLTAMLDRLGEAKTELQVNLWRS
Ga0208182_100017869	F015480	AGGAG	MNLPTLENMHISEHMENVYAQIIAEEDIGEDYGTKAIIQERVHTPRQRIF
Ga0208182_100017870	F012033	AGGAG	MERRLSYKKEYTHPGNVYFKYVGNITEDGAMKLQERVGYHPAGYGFGNFACINNVARWNCSNSCD