Scaffold Ga0208182_1000055

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1000055
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 104785
• Total Scaffold Genes: 168
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 144 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038405	Metagenome / Metatranscriptome	166	Y
F039339	Metagenome	164	Y
F065851	Metagenome / Metatranscriptome	127	N
F079215	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100005511	F039339	GGA	MLRTEDVARVASDMGLVLDKRVTIQDGITYRYTLYDNNEFVEDFFETLAQAWSYIYYYDEEREYENLRPNIESA
Ga0208182_100005512	F038405	GAGG	MRISGPTLNQLRPLLTKALQTGAEVSFMYHDKRRSGPLKDFGWGPQGPFITIQDSKYVNCPEGDIPHTEIKSFSLVKMSELRVEQFVGTE
Ga0208182_10000557	F079215	GGA	MQNLHRAIVSMPSDRNARPIDNFEHLTISYGRHSWAVKVPKGEFAQAHLEVTRKAEHDGMEDD
Ga0208182_100005590	F065851	AGGAGG	MSDNLVIPVHDAILPYMFQGVKWAIPNVGDNKETHNLAMARLFEKVGEHVQAFSVRTDCFVPGPPTLGAVKHHHNMFVRLCNLIDTNTKRDNMERLEAHHITHERRAFKIYPVRYFDVKNDYCRRWIELCLQAMSNISQLTENTWANDWSEATGKEMKKLFREGYRLMCVELFNVPVIEAEKVFDESTPFFLTKNHFETYDVGHIPTIEWIKHPALGGEFTEDELRPISTTNVPVAPGVAENDGNTPQRELERRMQGGEVVE