Scaffold Ga0208570_1022404

Overview

Basic Information

• Taxon OID: 3300025249
• Scaffold ID: Ga0208570_1022404
• Source Dataset Name: Marine microbial communities from the Deep Indian Ocean - MP1202 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 927
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Indian Ocean
• Coordinates
  • Lat. (^o): -30.33
  • Long. (^o): 103.31
  • Depth (m): 4000.85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018739	Metagenome / Metatranscriptome	233	Y
F087333	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208570_10224041	F018739	N/A	QKYEPTLDLVKERLAKIDGLIEKFKDLPDVQQKLQGAKSALLESEEEIMNYFDLTDIVKRDLN
Ga0208570_10224042	F087333	AGGAG	MSMWGMNDGATITGKHTWTNDDATLADGSSGTNATYVTNSVEAGDCLLGFDGLLYRVVSVTSETALEVDRVYEGSTAANEDITRMKLPRHIKITNDDGTGMTLQDFGIFGITDAERSAGVDNLSAVGEVLVGSCHRSVPAVTVAAPSTNTVATSSVVTADNTIGVANHGFRTGTKLNYLNGSGSSIGGLSETAYYVIAKETTDSGS