NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207904_1042707

Scaffold Ga0207904_1042707


Overview

Basic Information
Taxon OID3300025248 Open in IMG/M
Scaffold IDGa0207904_1042707 Open in IMG/M
Source Dataset NameMarine viral communities from the Deep Pacific Ocean - MSP-118 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)787
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)11.9811Long. (o)-108.0335Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002744Metagenome / Metatranscriptome533Y
F043153Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0207904_10427071F043153GGTGGMPHVNGEIQPSQVKSQPVYDVASYGTDLFLPLTDVGLTETALTFSGVTMTRDTTGSNQPLDSFPVVYSDTDTGILLNEGDNTIYN
Ga0207904_10427072F002744N/ANGGEHLNLYAQPLTTNTVAPGVGATIIYSTTGTNGAEQYYTRPTNESAAGTAAGTRTQGGDMTIMGGNEISALYTVVSGATATASQHDVGYSEFLSPDFNTSMPYRVAIQPTATALGSNANAVTGGDGLMKYEMPRGQGIPLAENVTVTNFYTNRDARTGASNFINFVRYTK

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