Scaffold Ga0207880_1030015

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207880_1030015

Scaffold Ga0207880_1030015

Overview

Basic Information
Taxon OID	3300025247 Open in IMG/M
Scaffold ID	Ga0207880_1030015 Open in IMG/M
Source Dataset Name	Marine viral communities from the Deep Pacific Ocean - MSP-91 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	852
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-5.7497	Long. (^o)	-170.7411	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003635	Metagenome / Metatranscriptome	476	Y
F040337	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207880_10300153	F003635	GAGG	MNEKNTDHLLKLIDSLIKLVGKNTDHINKLADEIAELKKGDK
Ga0207880_10300154	F040337	AGGGGG	MKELKPNTLWLVIKHVHYESSSFTDDYSVPKATKNKGQADQYLHSLNMLNESKSTSYFLVSVPN

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