Scaffold Ga0207880_1007977

Overview

Basic Information

• Taxon OID: 3300025247
• Scaffold ID: Ga0207880_1007977
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-91 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1797
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -5.7497
  • Long. (^o): -170.7411

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059367	Metagenome	134	N
F098050	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207880_10079771	F098050	GGAG	VKPLQLGLSLIPVAIIVIALIGWVVTLRGNIDAAIGSIEELQQSRYNDSDLVERVQELSVASEEGMTKLAWIMEEYGPAIEAIRDRELDTGILQGIADVTTRQAVVE
Ga0207880_10079773	F059367	GGA	MTLFEKICRMVGDRRIPAPRMPAFRSFRVGFANRHVTTVVLMAIVISAAAVSVGLYFAVKDVVHSSWDWPDSGAAYYADEDGMSKMGQKLPLNQDGTESQTLEIRMAANSRMDTLTATLEMGKASVDCIAIERVAGTSGYLWVDTFTMDNLVAPTLSMNASFVHQMTLSGFVDGHHVGPTQNSTGAPDITVESTRGAGTYTATGTVDRLLITLAGDAYVRLVSISGHCSTGPVDLDYLRVGNFNLTNIHIGDDGNIDTPALDITSDVIVHSLSDSLVDRSIMVK